SimiCviz
SimiCviz is the R / Bioconductor component of SimiC-Suite. It supports tool-agnostic assessment, comparison, visualization, and reporting for GRN outputs, including outputs produced by SimiCPipeline.
Use SimiCviz when the goal is to inspect inferred network weights, compare regulatory programs, visualize Regulon Activity Score (RAS) patterns, and generate reproducible figures and tables.
Tutorial
The tutorial below is a local copy of the pre-rendered SimiCviz vignette from the ML4BM-Lab/SimiCviz repository. It is included as existing HTML so the website can publish without installing or executing R / Bioconductor dependencies.
SimiCviz R / Bioconductor Tutorial
Assessment and visualization workflow for GRN outputs, including loading GRN data, computing or importing Regulon Activity Score (RAS) values, visualizing weights, and comparing regulatory programs across phenotypes.